pyANI-plus subcommands

pyANI-plus follows a subcommand-based approach, where the primary command is followed by a subcommand that defines the operation to be performed. The format is: pyani-plus <subcommand>. For example, to obtain the list of runs in a give pyANI-plus SQLite3 database, you would use list-runs subcommand:

pyani-plus list-runs <path_to_database>

This section lists all available subcommands for pyANI-plus, describing their usage and functionality within the software.