8  plot-run-comp

The plot-run-comp subcommand compares ANI results from multiple runs, generating scatterplots and tabular summaries. All plots, including formats such as JPG, PDF, PNG and SVGZ, as well as the tabular data, will be saved in the outdir directory.

Important

The output directory must already exist. The scatter plots will be named <method>_<property>_<run-id>_vs_*.<extension> and any pre-existing files will be overwritten.

pyani-plus plot-run-comp Usage

pyani-plus plot-run [OPTIONS]

8.1 Options

--database: Path to pyANI-plus SQLite3 database. (FILE) [REQUIRED]

--outdir: Output directory. (DIRECTORY) [REQUIRED]

--run-ids: Which runs (comma separated list, reference first)? (TEXT) [REQUIRED]

--columns: How many columns to use when tiling plots of multiple runs. Default 0 means automatically tries for square tiling. [Default: 0] (Integer range: \(x\geq0\))

--help, -h: Display usage information for pyani-plus plot-run and exit.