Resources

`All Contributors`

All Contributors documentation: https://allcontributors.org/docs/en/overview

`click`

click documentation: https://click.palletsprojects.com/en/8.1.x/

DOI to BibTeX conversion

DOI to BibTeX converter: https://www.bibtex.com/c/doi-to-bibtex-converter/

`GitHub`

Creating a GitHub issue: https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue
Creating a pull request: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request
GitHub Actions documentation: https://docs.github.com/en/actions
Repository forks: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/working-with-forks/fork-a-repo

`JSpecies`

JSpeciesWS online service: https://jspecies.ribohost.com/jspeciesws/#home

`MUMmer`

MUMmer3 manual: https://mummer.sourceforge.net/manual/
- .delta output format: https://mummer.sourceforge.net/manual/#nucmeroutput
- show-coords with description of output format: https://mummer.sourceforge.net/manual/#coords

Publications

Kurtz et al. (2004)

`Quarto`

The Quarto project: https://quarto.org/
The Quarto guide: https://quarto.org/docs/guide/
Publishing Quarto on GitHub pages: https://quarto.org/docs/publishing/github-pages.html

`R`/`RStudio`

RStudio Desktop: https://posit.co/download/rstudio-desktop/

`rich`

rich documentation: https://rich.readthedocs.io/en/stable/introduction.html

`SQLite3`

aiosqlite: library for asynchronous access to sqlite3
Python sqlite3 module: https://docs.python.org/3/library/sqlite3.html
- Threadsafety in the sqlite3 module: https://docs.python.org/3/library/sqlite3.html#sqlite3.threadsafety
Threadsafe modes with sqlite3: https://www.sqlite.org/threadsafe.html

`Visual Studio Code`

Visual Studio Code: https://code.visualstudio.com/