1  Introduction

This book comprises a set of design documents for the pyani-plus team. In this documentation we record a range of aspects of development and design relevant to pyani-plus, including:

• planned developments for pyani-plus
• expected behaviour for pyani-plus
• style guides and other team documentation
• notes on genome comparison and other algorithms
• notes on the use of third-party tools relevant to pyani-plus
• expected and actual behaviour of third-party tools relevant to pyani-plus